If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ), 'gf_id' => 'HOM05D000875', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000875' ), 'data_identifier' => 'HOM05D000875', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000875', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '681', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00350' => 'bna', 'A02p06860' => 'bna', 'A07p18690' => 'bna', 'A09p67400' => 'bna', 'A10p04300' => 'bna', 'A10p04340' => 'bna', 'A10p17020' => 'bna', 'Aa31LG1G19070' => 'aar', 'Aa31LG3G16990' => 'aar', 'Aa31LG4G15200' => 'aar', 'Aa31LG4G15210' => 'aar', 'Aa31LG4G15220' => 'aar', 'Aa31LG4G15230' => 'aar', 'Aa31LG5G7990' => 'aar', 'Aa31sc23G170' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2835' => 'aag', 'Actinidia03693' => 'ach', 'Actinidia07066' => 'ach', 'Actinidia13863' => 'ach', 'Actinidia21291' => 'ach', 'Actinidia21296' => 'ach', 'Actinidia28873' => 'ach', 'Actinidia32972' => 'ach', 'Actinidia37240' => 'ach', 'Actinidia37241' => 'ach', 'Ah.08g214830' => 'amhyb', 'Ah.15g097020' => 'amhyb', 'AL1G15460' => 'aly', 'AL4G22000' => 'aly', 'AL5G24860' => 'aly', 'AL6G20610' => 'aly', 'AL6G20640' => 'aly', 'AL8G36340' => 'aly', 'Aqoxy1G00448' => 'aox', 'Aqoxy2G00542' => 'aox', 'Aqoxy2G01668' => 'aox', 'Aqoxy2G02007' => 'aox', 'Aqoxy4G03007' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00K3B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61XZVK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.62L8X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9K9ZRS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A62ARJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECL9GG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F0C02G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33RZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FG2BU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JHVV9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KRI533' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGZW1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PE0MVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW0P4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TU84G6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIT10G' => 'arhy', 'AT1G05577' => 'ath', 'AT2G28150' => 'ath', 'AT3G46110' => 'ath', 'AT5G10150' => 'ath', 'AT5G59790' => 'ath', 'ATR0113G010' => 'atr', 'ATR0564G293' => 'atr', 'ATR0737G075' => 'atr', 'ATR1145G058' => 'atr', 'Atru.chr1.4100' => 'acertr', 'Atru.chr11.2717' => 'acertr', 'Atru.chr3.3522' => 'acertr', 'Atru.chr3.3820' => 'acertr', 'Atru.chr4.148' => 'acertr', 'Atru.chr4.160' => 'acertr', 'AUR62001837' => 'cqu', 'AUR62002030' => 'cqu', 'AUR62003768' => 'cqu', 'AUR62009625' => 'cqu', 'AUR62014960' => 'cqu', 'AUR62029174' => 'cqu', 'BcaB02g06839' => 'bca', 'BcaB02g10152' => 'bca', 'BcaB02g10731' => 'bca', 'BcaB05g22584' => 'bca', 'BcaB08g36219' => 'bca', 'BcaC02g10949' => 'bca', 'BcaC03g13298' => 'bca', 'BcaC04g19630' => 'bca', 'BcaC05g24362' => 'bca', 'BcaC07g42128' => 'bca', 'BolC2t06393H' => 'bol', 'BolC2t07315H' => 'bol', 'BolC4t23838H' => 'bol', 'BolC5t29172H' => 'bol', 'BolC8t52697H' => 'bol', 'BolC9t58097H' => 'bol', 'BraA02t05020Z' => 'bra', 'BraA02t05764Z' => 'bra', 'BraA07t29580Z' => 'bra', 'BraA09t42069Z' => 'bra', 'BraA10t42701Z' => 'bra', 'BraA10t43785Z' => 'bra', 'C02p04290' => 'bna', 'C02p12150' => 'bna', 'C04p23360' => 'bna', 'C05p03940' => 'bna', 'C08p51690' => 'bna', 'C09p52280' => 'bna', 'CAN.G1361.10' => 'can', 'CAN.G1361.9' => 'can', 'CAN.G185.26' => 'can', 'CAN.G269.1' => 'can', 'CAN.G394.21' => 'can', 'CAN.G420.6' => 'can', 'CAN.G546.48' => 'can', 'CAN.G972.1' => 'can', 'CAN.G972.2' => 'can', 'CANSAT01G1924' => 'cansat', 'CANSAT11G0962' => 'cansat', 'CANSAT25G2534' => 'cansat', 'CANSAT54G1899' => 'cansat', 'CANSAT56G3882' => 'cansat', 'CARHR005070' => 'chi', 'CARHR121000' => 'chi', 'CARHR154450' => 'chi', 'CARHR203140' => 'chi', 'CARHR273370' => 'chi', 'Carub.0001s0490' => 'cru', 'Carub.0004s0897' => 'cru', 'Carub.0005s1196' => 'cru', 'Carub.0006s0861' => 'cru', 'Carub.0008s2045' => 'cru', 'Ca_01708_v3' => 'car', 'Ca_03226_v3' => 'car', 'Ca_17717_v3' => 'car', 'Ca_19190_v3' => 'car', 'Ca_19319_v3' => 'car', 'Cc01_g10330' => 'ccan', 'Cc01_g12290' => 'ccan', 'Cc02_g08340' => 'ccan', 'Cc02_g26760' => 'ccan', 'Cc07_g15510' => 'ccan', 'Cc08_g05500' => 'ccan', 'CDE02G4264' => 'cde', 'CDE02G4594' => 'cde', 'CDE03G0238' => 'cde', 'CDE04G1220' => 'cde', 'CDE04G3478' => 'cde', 'CDE06G1645' => 'cde', 'CDE06G1880' => 'cde', 'CDE07G0052' => 'cde', 'CDE07G0826' => 'cde', 'CDE07G1007' => 'cde', 'CDE08G0425' => 'cde', 'CDE09G0655' => 'cde', 'CDE10G0513' => 'cde', 'CDE10G0630' => 'cde', 'CDE10G0827' => 'cde', 'Cfa001521' => 'cfa', 'Cfa002690' => 'cfa', 'Cfa010295' => 'cfa', 'Cfa010697' => 'cfa', 'Cfa011448' => 'cfa', 'Ciclev10027553m.g' => 'ccl', 'Ciclev10028190m.g' => 'ccl', 'Ciclev10029908m.g' => 'ccl', 'CiPaw.02G181200' => 'cil', 'CiPaw.03G139700' => 'cil', 'CiPaw.13G099400' => 'cil', 'CiPaw.13G123100' => 'cil', 'CiPaw.14G094500' => 'cil', 'ClCG02G021560' => 'cla', 'ClCG03G001880' => 'cla', 'ClCG07G003150' => 'cla', 'ClCG07G009630' => 'cla', 'ClCG09G003620' => 'cla', 'COL.COLO4_09925' => 'col', 'COL.COLO4_11103' => 'col', 'COL.COLO4_18448' => 'col', 'Cpa.g.c29923.3' => 'cpa', 'Cpa.g.c40192' => 'cpa', 'Cpa.g.sc1.354' => 'cpa', 'Cpa.g.sc190.33' => 'cpa', 'Cpa.g.sc476.3' => 'cpa', 'CsaV3_1G033680' => 'csa', 'CsaV3_4G004680' => 'csa', 'CsaV3_5G006900' => 'csa', 'CsaV3_6G014330' => 'csa', 'CsaV3_7G031560' => 'csa', 'CsaV3_UNG137030' => 'csa', 'CsaV3_UNG146140' => 'csa', 'CsaV3_UNG218500' => 'csa', 'CSS0006074' => 'camsi', 'CSS0010484' => 'camsi', 'CSS0027853' => 'camsi', 'CSS0031029' => 'camsi', 'CSS0041026' => 'camsi', 'CSS0044092' => 'camsi', 'CSS0045254' => 'camsi', 'CSS0050290' => 'camsi', 'DCAR_006003' => 'dca', 'DCAR_011505' => 'dca', 'DCAR_015507' => 'dca', 'DCAR_018884' => 'dca', 'DCAR_024996' => 'dca', 'DCAR_027674' => 'dca', 'DCAR_029581' => 'dca', 'Dinv06142' => 'din', 'Dinv16218' => 'din', 'Dinv16307' => 'din', 'Dinv21930' => 'din', 'Dinv25976' => 'din', 'Dinv29377' => 'din', 'Dinv31420' => 'din', 'Dinv32690' => 'din', 'Dinv32849' => 'din', 'Dinv43507' => 'din', 'Dinv43948' => 'din', 'Duzib114G0561' => 'dzi', 'Duzib147G1235' => 'dzi', 'Duzib150G0456' => 'dzi', 'Duzib150G0512' => 'dzi', 'Duzib168G0123' => 'dzi', 'Duzib168G0816' => 'dzi', 'Duzib170G0406' => 'dzi', 'Duzib170G1168' => 'dzi', 'Duzib264G0516' => 'dzi', 'ECA232G1955' => 'eca', 'ECA233G0178' => 'eca', 'ECA233G6070' => 'eca', 'ECA236G2415' => 'eca', 'ECA246G3652' => 'eca', 'ECA247G1911' => 'eca', 'ECA248G0239' => 'eca', 'ECA248G1962' => 'eca', 'ECA248G2498' => 'eca', 'ECA248G3366' => 'eca', 'EL10Ac6g15073' => 'bvu', 'EL10Ac7g15963' => 'bvu', 'EL10Ac9g22614' => 'bvu', 'Eucgr.B02400' => 'egr', 'Eucgr.G02909' => 'egr', 'Eucgr.G03420' => 'egr', 'Eucgr.G03434' => 'egr', 'Eucgr.I00418' => 'egr', 'Eucgr.J00387' => 'egr', 'FAN11G1500' => 'fan', 'FAN11G1535' => 'fan', 'FAN15G0607' => 'fan', 'FAN16G0875' => 'fan', 'FAN16G3051' => 'fan', 'FAN19G2733' => 'fan', 'FAN21G1138' => 'fan', 'FAN21G1810' => 'fan', 'FAN23G1715' => 'fan', 'FAN24G1076' => 'fan', 'FAN25G1781' => 'fan', 'FAN25G2615' => 'fan', 'FAN26G3100' => 'fan', 'FAN28G0079' => 'fan', 'FvH4_1g21340' => 'fve', 'FvH4_2g11530' => 'fve', 'FvH4_3g30680' => 'fve', 'FvH4_3g34970' => 'fve', 'Glyma.05G180800' => 'gma', 'Glyma.08G138500' => 'gma', 'Glyma.08G159000' => 'gma', 'Glyma.10G290300' => 'gma', 'Glyma.11G142600' => 'gma', 'Glyma.11G193000' => 'gma', 'Glyma.12G065900' => 'gma', 'Glyma.12G081000' => 'gma', 'Glyma.12G178300' => 'gma', 'Glyma.13G322200' => 'gma', 'Glyma.15G267400' => 'gma', 'Glyma.20G098900' => 'gma', 'Gohir.A03G029200' => 'ghi', 'Gohir.A03G038800' => 'ghi', 'Gohir.A05G097900' => 'ghi', 'Gohir.A07G092450' => 'ghi', 'Gohir.A07G095800' => 'ghi', 'Gohir.A08G201000' => 'ghi', 'Gohir.A10G214300' => 'ghi', 'Gohir.A11G200300' => 'ghi', 'Gohir.D03G129600' => 'ghi', 'Gohir.D03G139400' => 'ghi', 'Gohir.D05G098000' => 'ghi', 'Gohir.D07G100200' => 'ghi', 'Gohir.D08G218200' => 'ghi', 'Gohir.D10G223100' => 'ghi', 'Gohir.D11G223600' => 'ghi', 'Gorai.001G108000' => 'gra', 'Gorai.003G136300' => 'gra', 'Gorai.003G146100' => 'gra', 'Gorai.004G232000' => 'gra', 'Gorai.007G241300' => 'gra', 'Gorai.009G101600' => 'gra', 'Gorai.011G254000' => 'gra', 'GSVIVG01005997001' => 'vvi', 'GSVIVG01006373001' => 'vvi', 'GSVIVG01016603001' => 'vvi', 'GSVIVG01025033001' => 'vvi', 'GSVIVG01026683001' => 'vvi', 'GSVIVG01031468001' => 'vvi', 'GSVIVG01031469001' => 'vvi', 'HanXRQChr01g0009861' => 'han', 'HanXRQChr01g0017381' => 'han', 'HanXRQChr01g0019611' => 'han', 'HanXRQChr02g0055531' => 'han', 'HanXRQChr03g0089441' => 'han', 'HanXRQChr04g0106911' => 'han', 'HanXRQChr04g0117481' => 'han', 'HanXRQChr08g0220261' => 'han', 'HanXRQChr08g0228251' => 'han', 'HanXRQChr09g0247711' => 'han', 'HanXRQChr11g0345951' => 'han', 'HanXRQChr13g0396271' => 'han', 'HanXRQChr15g0470951' => 'han', 'HanXRQChr15g0470961' => 'han', 'HanXRQChr17g0542421' => 'han', 'Haze_03279' => 'cav', 'Haze_17020' => 'cav', 'Haze_23711' => 'cav', 'Haze_24031' => 'cav', 'Haze_24962' => 'cav', 'Hma1.2p1_0051F.1_g029430' => 'hma', 'Hma1.2p1_0128F.1_g059880' => 'hma', 'Hma1.2p1_0148F.1_g065990' => 'hma', 'Hma1.2p1_0192F.1_g083630' => 'hma', 'Hma1.2p1_0192F.1_g083670' => 'hma', 'Hma1.2p1_0192F.1_g083760' => 'hma', 'Hma1.2p1_0624F.1_g191210' => 'hma', 'Hma1.2p1_1063F.1_g253520' => 'hma', 'Hma1.2p1_1983F.1_g310020' => 'hma', 'Hma1.2p1_2442F.1_g322270' => 'hma', 'HPP92_009601' => 'vpl', 'HPP92_012520' => 'vpl', 'HPP92_014318' => 'vpl', 'HPP92_020364' => 'vpl', 'HPP92_020827' => 'vpl', 'HPP92_021164' => 'vpl', 'HPP92_021230' => 'vpl', 'HPP92_025961' => 'vpl', 'HPP92_027253' => 'vpl', 'Hund01426' => 'sun', 'Hund04998' => 'sun', 'Hund16269' => 'sun', 'Hund18938' => 'sun', 'Lalb_Chr01g0004581' => 'lal', 'Lalb_Chr02g0144031' => 'lal', 'Lalb_Chr03g0026841' => 'lal', 'Lalb_Chr11g0075251' => 'lal', 'Lalb_Chr19g0136931' => 'lal', 'Lalb_Chr22g0350401' => 'lal', 'Lalb_Chr24g0394921' => 'lal', 'Lalb_Chr25g0283771' => 'lal', 'Lj1A211T42' => 'lonja', 'Lj2A1008T36' => 'lonja', 'Lj2A1008T37' => 'lonja', 'Lj2C1055T3' => 'lonja', 'Lj2g0009797' => 'lja', 'Lj2g0025227' => 'lja', 'Lj3g0002642' => 'lja', 'Lj3g0006705' => 'lja', 'Lj3g0010378' => 'lja', 'Lj3g0020390' => 'lja', 'Lj3g0028131' => 'lja', 'Lj4A882T15' => 'lonja', 'Lj4A884G23' => 'lonja', 'Lj4g0014963' => 'lja', 'Lj5g0018335' => 'lja', 'Lj8A88T26' => 'lonja', 'Lsat_1_v5_gn_1_64580' => 'lsa', 'Lsat_1_v5_gn_1_87440' => 'lsa', 'Lsat_1_v5_gn_5_142720' => 'lsa', 'Lsat_1_v5_gn_5_167421' => 'lsa', 'Lsat_1_v5_gn_5_42720' => 'lsa', 'Lsat_1_v5_gn_6_43200' => 'lsa', 'Lsat_1_v5_gn_7_33901' => 'lsa', 'Lsat_1_v5_gn_8_16101' => 'lsa', 'Lsat_1_v5_gn_9_22261' => 'lsa', 'Lsat_1_v5_gn_9_65120' => 'lsa', 'Manes.04G013400' => 'mes', 'Manes.04G030500' => 'mes', 'Manes.07G111700' => 'mes', 'Manes.10G153300' => 'mes', 'Manes.11G134200' => 'mes', 'Manes.11G152200' => 'mes', 'Manes.12G137400' => 'mes', 'Mapoly0032s0007' => 'mpo', 'MBI04_g09726_MAGBIO' => 'mbi', 'MBI05_g06570_MAGBIO' => 'mbi', 'MBI05_g35604_MAGBIO' => 'mbi', 'MBI05_g43461_MAGBIO' => 'mbi', 'MBI05_g46940_MAGBIO' => 'mbi', 'MBI14_g35852_MAGBIO' => 'mbi', 'MBI14_g35853_MAGBIO' => 'mbi', 'MD00G1165800' => 'mdo', 'MD01G1025500' => 'mdo', 'MD02G1283200' => 'mdo', 'MD03G1099800' => 'mdo', 'MD03G1127100' => 'mdo', 'MD07G1001300' => 'mdo', 'MD07G1001400' => 'mdo', 'MD11G1113900' => 'mdo', 'MD11G1147800' => 'mdo', 'Medtr1g115370' => 'mtr', 'Medtr2g062310' => 'mtr', 'Medtr2g084275' => 'mtr', 'Medtr4g057330' => 'mtr', 'Medtr4g063130' => 'mtr', 'Medtr4g111820' => 'mtr', 'Medtr8g091300' => 'mtr', 'MELO3C017595.2' => 'cme', 'MELO3C020702.2' => 'cme', 'MELO3C023498.2' => 'cme', 'MELO3C023839.2' => 'cme', 'MELO3C026950.2' => 'cme', 'Migut.B01411' => 'egut', 'Migut.H02383' => 'egut', 'Migut.L00105' => 'egut', 'Migut.N01652' => 'egut', 'Migut.N02545' => 'egut', 'Migut.N02662' => 'egut', 'MSTRG.17078' => 'ama', 'MSTRG.17760' => 'ama', 'MSTRG.18700' => 'ama', 'MSTRG.21182' => 'ama', 'MSTRG.3794' => 'ama', 'Nitab4.5_0000426g0060' => 'nta', 'Nitab4.5_0000766g0090' => 'nta', 'Nitab4.5_0001634g0040' => 'nta', 'Nitab4.5_0001897g0020' => 'nta', 'Nitab4.5_0002655g0090' => 'nta', 'Nitab4.5_0003212g0020' => 'nta', 'Nitab4.5_0003498g0020' => 'nta', 'Nitab4.5_0004414g0030' => 'nta', 'Nitab4.5_0005884g0020' => 'nta', 'Nitab4.5_0005884g0030' => 'nta', 'Nitab4.5_0009215g0050' => 'nta', 'Nitab4.5_0009826g0020' => 'nta', 'Nitab4.5_0015601g0010' => 'nta', 'Nitab4.5_0015601g0020' => 'nta', 'Nitab4.5_0028110g0010' => 'nta', 'Nn1g02098' => 'nnu', 'Nn1g03758' => 'nnu', 'Nn1g05290' => 'nnu', 'Nn2g10472' => 'nnu', 'Nn2g13840' => 'nnu', 'Nn2g15169' => 'nnu', 'Nn2g15829' => 'nnu', 'Nn3g19074' => 'nnu', 'Nn5g29044' => 'nnu', 'Nn6g35235' => 'nnu', 'Nn7g35892' => 'nnu', 'Oeu000600.1' => 'oeu', 'Oeu007311.1' => 'oeu', 'Oeu008358.1' => 'oeu', 'Oeu008359.1' => 'oeu', 'Oeu024943.1' => 'oeu', 'Oeu040297.1' => 'oeu', 'Oeu041023.1' => 'oeu', 'Oeu045788.1' => 'oeu', 'Oeu051800.1' => 'oeu', 'Oeu060711.1' => 'oeu', 'Os01g0778100' => 'osa', 'Os01g0839200' => 'osa', 'Os01g0975000' => 'osa', 'Os03g0192300' => 'osa', 'Os03g0692400' => 'osa', 'Os08g0561600' => 'osa', 'Os09g0571000' => 'osa', 'Peaxi162Scf00060g00313' => 'pax', 'Peaxi162Scf00365g00021' => 'pax', 'Peaxi162Scf00402g00927' => 'pax', 'Peaxi162Scf00411g00116' => 'pax', 'Peaxi162Scf00422g00079' => 'pax', 'Peaxi162Scf00422g00711' => 'pax', 'Peaxi162Scf00983g00415' => 'pax', 'Peaxi162Scf00986g00225' => 'pax', 'PGR031G3670' => 'pgr', 'PGR102G0295' => 'pgr', 'PGR102G1328' => 'pgr', 'PGR119G1253' => 'pgr', 'PGR119G1433' => 'pgr', 'PGR119G1829' => 'pgr', 'PGR142G4469' => 'pgr', 'PGSC0003DMG400000416' => 'stu', 'PGSC0003DMG400002267' => 'stu', 'PGSC0003DMG400015560' => 'stu', 'PGSC0003DMG400020631' => 'stu', 'PGSC0003DMG400027753' => 'stu', 'PGSC0003DMG400030309' => 'stu', 'PGSC0003DMG400031117' => 'stu', 'Phvul.002G261900' => 'pvu', 'Phvul.005G042900' => 'pvu', 'Phvul.005G069000' => 'pvu', 'Phvul.005G130600' => 'pvu', 'Phvul.007G011100' => 'pvu', 'Phvul.011G066900' => 'pvu', 'Potri.001G232300' => 'ptr', 'Potri.001G235700' => 'ptr', 'Potri.004G216200' => 'ptr', 'Potri.005G078300' => 'ptr', 'Potri.008G051000' => 'ptr', 'Potri.009G005800' => 'ptr', 'Potri.009G024900' => 'ptr', 'Potri.009G027500' => 'ptr', 'Potri.010G209600' => 'ptr', 'Pp3c10_12159' => 'ppa', 'Pp3c14_23220' => 'ppa', 'Pp3c17_23930' => 'ppa', 'Pp3c18_11140' => 'ppa', 'Pp3c1_15970' => 'ppa', 'Pp3c1_41700' => 'ppa', 'Pp3c2_20380' => 'ppa', 'Pp3c7_12520' => 'ppa', 'Prupe.2G001400' => 'ppe', 'Prupe.6G084700' => 'ppe', 'Prupe.6G112400' => 'ppe', 'Prupe.6G181200' => 'ppe', 'Psat1g129480' => 'psa', 'Psat5g253440' => 'psa', 'Psat6g236480' => 'psa', 'Psat6g236520' => 'psa', 'Psat7g052920' => 'psa', 'Psat7g191240' => 'psa', 'Psat7g218880' => 'psa', 'PSO133G0057' => 'pso', 'PSO339G2929' => 'pso', 'PSO339G4626' => 'pso', 'PSO339G6002' => 'pso', 'PSO339G6584' => 'pso', 'PSO384G0717' => 'pso', 'PSO384G3581' => 'pso', 'PSO541G4997' => 'pso', 'PSO648G0034' => 'pso', 'PSO801G0239' => 'pso', 'QL01p015125' => 'qlo', 'QL01p015218' => 'qlo', 'QL01p033342' => 'qlo', 'QL04p002024' => 'qlo', 'QL06p050072' => 'qlo', 'QL08p058732' => 'qlo', 'RcHm_v2.0_Chr1g0313061' => 'rch', 'RcHm_v2.0_Chr2g0115201' => 'rch', 'RcHm_v2.0_Chr5g0056921' => 'rch', 'RcHm_v2.0_Chr5g0062881' => 'rch', 'Rhsim01G0211000' => 'rsi', 'Rhsim07G0049000' => 'rsi', 'Rhsim08G0009300' => 'rsi', 'Rhsim09G0163900' => 'rsi', 'Rhsim13G0086900' => 'rsi', 'Sabra04G0147100' => 'sbr', 'Sabra05G0064300' => 'sbr', 'Sabra08G0036500' => 'sbr', 'Sabra09G0003100' => 'sbr', 'Sabra09G0016500' => 'sbr', 'Sabra09G0018700' => 'sbr', 'Sabra10G0161900' => 'sbr', 'Sabra12G0106000' => 'sbr', 'Sabra16G0139000' => 'sbr', 'Sabra16G0141800' => 'sbr', 'SalBow2G1394' => 'sbo', 'SalBow3G0343' => 'sbo', 'SalBow4G0154' => 'sbo', 'SalBow5G2150' => 'sbo', 'SalBow5G2497' => 'sbo', 'SalBow5G4521' => 'sbo', 'SalBow6G5923' => 'sbo', 'Sc06g0010810' => 'sci', 'Sc12g0001680' => 'sci', 'Sc16g0005470' => 'sci', 'Sed0009948' => 'sed', 'Sed0017622' => 'sed', 'Sed0018055' => 'sed', 'Sed0023738' => 'sed', 'Sed0026514' => 'sed', 'SEGI_15204' => 'sgi', 'SEGI_28489' => 'sgi', 'SEGI_30854' => 'sgi', 'SEGI_30864' => 'sgi', 'SEGI_35961' => 'sgi', 'SGA_v2.0_scaffold120G32894' => 'sas', 'SGA_v2.0_scaffold140G35474' => 'sas', 'SGA_v2.0_scaffold28G11898' => 'sas', 'SGA_v2.0_scaffold4G02231' => 'sas', 'SGA_v2.0_scaffold50G18608' => 'sas', 'SGA_v2.0_scaffold510G52620' => 'sas', 'SGA_v2.0_scaffold5G03100' => 'sas', 'SHI05968' => 'shi', 'SMO089G0015' => 'smo', 'SMO119G0065' => 'smo', 'SMO137G0112' => 'smo', 'SMO351G0455' => 'smo', 'Solyc01g081630.4' => 'sly', 'Solyc04g010330.3' => 'sly', 'Solyc04g054790.2' => 'sly', 'Solyc04g054800.3' => 'sly', 'Solyc06g030470.4' => 'sly', 'Solyc06g075690.3' => 'sly', 'Solyc11g066380.3' => 'sly', 'Solyc11g073110.2' => 'sly', 'Sopen01g033180' => 'spe', 'Sopen04g005510' => 'spe', 'Sopen04g024600' => 'spe', 'Sopen06g009320' => 'spe', 'Sopen06g032080' => 'spe', 'Sopen11g026130' => 'spe', 'Sopen11g030760' => 'spe', 'Sp1g04420' => 'spa', 'Sp4g10960' => 'spa', 'Sp6g21460' => 'spa', 'Sp6g33250' => 'spa', 'TAR369G1022' => 'tar', 'TAR623G0289' => 'tar', 'TAR623G0375' => 'tar', 'TAR623G0673' => 'tar', 'TAR628G1378' => 'tar', 'TAR633G0980' => 'tar', 'TAR633G1164' => 'tar', 'TAR636G0180' => 'tar', 'THA.LOC104799080' => 'tha', 'THA.LOC104800576' => 'tha', 'THA.LOC104801546' => 'tha', 'THA.LOC104804548' => 'tha', 'THA.LOC104810805' => 'tha', 'THA.LOC104814865' => 'tha', 'THA.LOC104816072' => 'tha', 'Thecc.01G105100' => 'tca', 'Thecc.08G193300' => 'tca', 'Thecc.09G327600' => 'tca', 'Thecc.09G350900' => 'tca', 'Thecc.10G048600' => 'tca', 'Thhalv10009387m.g' => 'esa', 'Thhalv10013653m.g' => 'esa', 'Thhalv10013690m.g' => 'esa', 'Thhalv10016498m.g' => 'esa', 'TPR.G1012' => 'tpr', 'TPR.G14014' => 'tpr', 'TPR.G16144' => 'tpr', 'TPR.G21027' => 'tpr', 'TPR.G2242' => 'tpr', 'TPR.G28209' => 'tpr', 'TWI09G1550' => 'twi', 'TWI31G0629' => 'twi', 'TWI31G0905' => 'twi', 'TWI73G0416' => 'twi', 'TWI75G1353' => 'twi', 'TWI77G0844' => 'twi', 'TWI79G0879' => 'twi', 'TWI79G1373' => 'twi', 'unitig_0.g1732' => 'ugi', 'unitig_22.g6653' => 'ugi', 'unitig_27.g25047' => 'ugi', 'unitig_32.g10693' => 'ugi', 'unitig_62.g23939' => 'ugi', 'unitig_699.g19187' => 'ugi', 'unitig_736.g22401' => 'ugi', 'unitig_736.g22402' => 'ugi', 'unitig_746.g26621' => 'ugi', 'unitig_747.g21823' => 'ugi', 'unitig_747.g21972' => 'ugi', 'unitig_899.g14963' => 'ugi', 'vmacro03113' => 'vma', 'vmacro11781' => 'vma', 'vmacro14394' => 'vma', 'vmacro18611' => 'vma', 'vmacro21466' => 'vma', 'vmacro22470' => 'vma', 'VMungo0251G3232' => 'vmu', 'VMungo0720G1156' => 'vmu', 'VMungo1080G1227' => 'vmu', 'VMungo1127G1254' => 'vmu', 'VMungo1127G1420' => 'vmu', 'VMungo1309G1940' => 'vmu', 'Zm00001eb008380' => 'zma', 'Zm00001eb039020' => 'zma', 'Zm00001eb053610' => 'zma', 'Zm00001eb151570' => 'zma', 'Zm00001eb175850' => 'zma', 'Zm00001eb211940' => 'zma', 'Zm00001eb217090' => 'zma', 'Zm00001eb307740' => 'zma', 'Zm00001eb350150' => 'zma', 'Zm00001eb368040' => 'zma' ) $gf_id = 'HOM05D000875' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000875' ) $data_identifier = 'HOM05D000875' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 15, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 15, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 12, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb368040' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1